1. Home
  2. Brucella
Brucella
Brucella Phylogenetic Tree
【Name】 Brucella phylogenetic tree
【Description】 Strains of Brucella with high-quality complete genome sequencing were selected, and duplicates were removed, resulting in 341 strains. The GTDB-Tk software (version 2.4.0) was used in conjunction with its database (version r220) to construct a phylogenetic tree based on the whole genome sequences of these Brucella strains. The tree was subsequently refined using the iTOL online software (https://itol.embl.de) to obtain the final phylogenetic tree.

【The dendrogram of Brucella】

Brucella Phylogenetic Tree
How to perform your evolutionary analysis with ZoonosisDB

【Tools link】 iTOL (https://itol.embl.de); Install GTDB-Tk using conda

【Description】

  1. Step 1: Download the strains of Brucella with high-quality complete genome sequencing from Zoonosis, and after screening to remove duplicates, obtain 341 strains. Here are the download links:

  2. Step 2: Rename all the FASTA files to more convenient names for display.

  3. Step 3: The GTDB-Tk software (version 2.4.0) was used in conjunction with its database (version r220) to construct a phylogenetic tree based on the whole genome sequences of these Brucella strains.

  4. Step 4: The tree was subsequently refined using the iTOL online software (https://itol.embl.de) to obtain the final phylogenetic tree.