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Mycobacterium tuberculosis phylogenetic tree
【Name】 Mycobacterium tuberculosis phylogenetic tree
【Description】 Strains of Mycobacterium tuberculosis with high-quality complete genome sequencing were selected to eliminate duplicates. The GTDB-Tk software (ver: 2.4.0) was used in conjunction with its database (ver: r220) to construct a phylogenetic tree based on the whole genome for these Mycobacterium tuberculosis strains. The tree was then refined using the iTOL online software (https://itol.embl.de) to obtain the final phylogenetic tree.

【The dendrogram of Mycobacterium tuberculosis】

The dendrogram of Mycobacterium tuberculosis
How to perform your evolutionary analysis with ZoonosisDB

【Tools link】 iTOL (https://itol.embl.de); Install GTDB-Tk using conda

【Description】

  1. Step 1: Download high-quality complete genome-sequenced strains of Mycobacterium tuberculosis from the Zoonosis and NCBI, and screen to remove duplicates. Here are the download links:

  2. Step 2: Rename all the FASTA files to more convenient names for display.

  3. Step 3: The GTDB-Tk software (version 2.4.0) was used in conjunction with its database (version r220) to construct a phylogenetic tree based on the whole genome sequences of these Brucella strains.

  4. Step 4: The tree was subsequently refined using the iTOL online software (https://itol.embl.de) to obtain the final phylogenetic tree.